There is also a recent work on parallel kmeans by kantabutra and couch kc99. So parallel power iteration clustering was developed and due to its parallel implementation it reduces the memory storage. Plots b through d are rescaled so the largest value is always at the. Power iteration clustering pic power iteration clustering pic is a scalable and efficient algorithm for clustering vertices of a graph given pairwise similarities as edge properties, described in lin and cohen, power iteration clustering. Add power iteration clustering algorithm with gaussian similarity function. Cluster object provides access to a cluster, which controls the job queue, and distributes tasks to workers for execution. Overall flowchart for parallel implementation of power iteration clustering algorithm. Parallel kmeans data clustering northwestern university. This section attempts to give an overview of cluster parallel processing using linux. Cohen presentedby minhuachen outline power iteration method spectral clustering power iteration clustering result spectralclustering 1 given the data matrix x x1,x2,xnp. School of computer science, carnegie mellon university.
Machine learning uses these data to detect patterns and adjust program. This paper presents a new clustering algorithm, the gpic, a graphics processing unit gpu accelerated algorithm for power iteration. Parallel clustering algorithms for image processing on. Learn to connect power supplies in parallel for higher. Parallel clustering algorithm for largescale biological data. The main steps of power iteration clustering algorithm are described in fig 2. Inflated power iteration clustering algorithm to optimize. Apr 21, 2016 power iteration clustering algorithm pic replaces the eigen values with pseudo eigen vector. Parallel netcdf an io library that supports data access to netcdf files in parallel. Pic replaces the eigen decomposition of the similarity matrix required by spectral clustering by a small number of matrixvector multiplications, which leads to a. Points are distributed within a disk in the hyperbolic plane, a pair of points is connected if their hyperbolic distance is below a threshold. Pic replaces the eigen decomposition of the similarity matrix required by spectral clustering by a small number of matrixvector multiplications, which leads to a great reduction in the computational complexities. Implementation of p pic algorithm in map reduce to handle.
Clustering, section 3 contains existing system parallel power iteration clustering. Animation that visualizes the power iteration algorithm on a 2x2 matrix. Lin 3 develop power iteration method which uses matrix vector multiplication but still it is not good for large dataset and there was a memory issue. So parallel power iteration clustering was developed and due to its parallel implementation it. The following table provides additional information on the members of this template class. A parallel clustering algorithm for power big data. This embedding turns out to be an effective cluster indicator, consistently outperforming widely used spectral methods such as ncut on real datasets.
Enhancing mapreduce framework for bigdata with hierarchical. An efficient implementation of chronic inflation based power. The parallelism concept of mapreduce comes into picture. The drawbacks of the parallel computing architecture like fault tolerance, node. It is an important tool for many fields including data mining, statistical data. One popular modern clustering algorithm is power iteration clustering5. Bowden wise computer scientist, software systems lab. Clustering of computers enables scalable parallel and distributed computing in both science and business applications.
Oison computer science department, comell university, ithaca, ny 14853, usa received 28 december 1993. To solve the optimal eigen value problem, in this paper we proposes an inflated power iteration clustering algorithm. It performs clustering by embedding data points in a lowdimensional subspace derived from the similarity matrix. It computes a pseudoeigenvector of the normalized affinity matrix of the graph via power iteration and uses it to cluster vertices. A starting point for applying clustering algorithms to unstructured document collections is to create a vector space model, alternatively known as a bagofwords. Connecting two or more power supplies in parallel figure 1 provides higher currents. There are currently very few unsupervised machine learning algorithms available for use with large data set. In his current role, as a software engineer, he works with research teams to deliver high quality software. Clustering using power iteration is fast and scalable. The first one is the runtime of constructing the similarity matrix, and the second is the runtime of the clustering algorithm. Gilder is an associate professor of computer science at the college of saint rose. Another term widely used for a power law graph is a scalefree network 2. Clustering task is, however, computationally expensive as many of the algorithms require iterative or recursive procedures and most of reallife data is high dimensional. Let x 1, x 2, x n be the n data points and p be the number of processors.
Therefore, the applications of parallel clustering algorithms and the clustering. In addition to kmeans, bisecting kmeans and gaussian mixture, mllib provides implementations of three other clustering algorithms, power iteration clustering, latent dirichlet allocation and. A single source program includes host codes running on cpu. This paper proposes a parallel implement of kmeans clustering algorithm based on hadoop distributed file system and mapreduce distributed computing framework to deal this problem. There are approximate algorithms for making spectral clustering more efficient. Power iteration is a very simple algorithm, but it may converge slowly. In section 1, contains introduction, section 2, main method power iteration clustering, section 3 contains existing system parallel power iteration clustering. Introduction clustering is the unsupervised classi.
He has extensive experience in highperformance computing, parallel architectures and parallelization techniques. Elsevier parallel computing parallel computing 21 1995 25 parallel algorithms for hierarchical clustering dark f. Parallel clustering algorithms for image processing on multi. Clustering result and the embedding provided by vt for the 3circles dataset. Hierarchical clustering offers several advantages over other clustering algorithms in that the number of clusters does not need to be specified in advance and the structure of the resulting dendrogram can offer insight into the larger structure of the data, e. Scale up centerbased data clustering algorithms by. Parallel power iteration clustering for big data using. Java treeview is not part of the open source clustering software. In b through d, the value of each component of vt is plotted against its index. Hierarchical clustering, has become increasingly popular in recent years as an effective strategy for tackling large scale data clustering problems. Power iteration clustering pic 6 is an algorithm that clusters data, using the power. Parallel computing on a cluster matlab answers matlab.
Algorithm design for ppic in mapreduce the algorithm discussed describes the procedure for implementing the parallel power iteration clustering using the hadoop mapreduce framework. It has a better ability of handling larger datasets. Pic takes an undirected graph with similarities defined on edges and outputs clustering assignment on nodes. In presenting pic, we make connections to and make. Pic provides an effective clustering indicator and outperform on real datasets with low dimensional data.
Therefore, the parallelization of clustering algorithms is inevitable, and various parallel clustering algorithms have been implemented and applied to many applications. Unit gpu accelerated algorithm for power iteration clustering pic. These two properties, small average distance and local clustering, are very di. Power iteration clustering pic largescale extension to spectral clustering key idea. For large data support more than 2 billion number of data points, see this page for an mpi implementation that uses 8byte integers. A parallel implementation using openmp and c a parallel implementation using mpi and c a sequential version in c. While mcl and tribemcl have been used extensively in clustering sequence similarity and other types of information, at a large scale, mcl becomes very demanding in terms of computational and memory requirements. This technique is simple, scalable, easily parallelized, and quite wellsuited to very large datasets. Spectral clustering is computationally expensive unless the graph is sparse and the similarity matrix can be efficiently constructed. Learn more about parfor, cluster, submat, matlab 2014a parallel computing toolbox. Power iteration clustering pic is a newly developed clustering algorithm. Parallel clustering algorithm for largescale biological. More details and an illustration are provided in the architecture section below. Wise has over 18 years of experience with ge and has indepth experience designing and developing solutions for ge businesses with focus on innovative.
Calculate the similarity matrix of the given graph. The values generated from storing and processing of big data cannot be analyzed using traditional computing techniques. Compared to traditional clustering algorithms, pic is simple, fast and relatively scalable. Assign each vectorintroduction clustering is a critical step in image processing and recognition.
Keywords clustering methods, hardware design, kmeans, parallel architectures, hardware folding i. The smallworld phenomenon can be interpreted as a power law distribution combined with a local clustering e. Our parallel clustering algorithm runs on the cluster computers environment. Wise has over 18 years of experience with ge and has indepth experience designing and developing solutions for ge businesses with focus on innovative technology solutions for the industrial internet.
We have implemented power iteration clustering pic in mllib, a simple and scalable graph clustering method described in lin and cohen, power iteration clustering. The p pic algorithm starts by the master processor determining the starting and ending indices for the corresponding data chunk for each processor and broadcasting the. To view the clustering results generated by cluster 3. Power iteration clustering carnegie mellon school of. Introduction the progressive incorporation of data collection and communication abilities into consumer electronics is gradually transforming our society. It performs clustering by embedding data points in a. There are several different forms of parallel computing.
Additional project details registered 20121028 report inappropriate content. Networkit is distributed as a python package, ready to use interactively from a python shell, which is the. To optimize graph based power iteration for big data based. An efficient implementation of chronic inflation based. Power iteration clustering a 3circles pic result b t 50, scale 0. Bowden wise is a computer scientist with over 14 years with the ge global research.
We present a simple and scalable graph clustering method called power iteration clustering pic. Introduction clustering or grouping document collections into conceptually meaningful clusters is a wellstudied problem. There are hierarchical kmeans 7 parallel clustering 8, hierarchical mst 9, hierarchical meanshift 10, and hierarchical dbscan 11, to name a few. Aug 08, 2014 the main steps of power iteration clustering algorithm are described in fig 2. Power iteration clustering is a scalable and efficient algorithm for clustering points given pointwise. Keywordsclustering methods, hardware design, kmeans, parallel architectures, hardware folding i. One unit must operate in constant voltage cv mode and the others in constant current cc mode. Finally, some power law graphs also display the smallworld phenomenon, for example, the social network formed by individuals. In addition, our parallel initialization gives an additional 1. We focus on the design principles and assessment of the hardware, software.
The main aim of this paper is to design a scalable machine learning algorithm to scaleup and speedup clustering algorithm without losing its accuracy. Graph clustering algorithms are commonly used in the telecom industry for this purpose, and can be applied to data center management and operation. Hardware implementation of the kmeans clustering algorithm. If the similarity matrix is an rbf kernel matrix, spectral clustering is expensive. Both requires data matrix and similarity matrix to be fitting into the processors memory that is infeasible for very larger datasets. Their algorithm requires broadcasting the data set over the internet in each iteration, which causes a lot of network traffic and overhead. Large problems can often be divided into smaller ones, which can then be solved at the same time. This chapter is devoted to building clusterstructured massively parallel processors. Pic finds a very lowdimensional embedding of a dataset using truncated power iteration on a normalized pairwise similarity matrix of the data. A parallel clustering algorithm for power big data analysis. Cuda kmeans clustering by serban giuroiu, a student at uc berkeley. Parallel computing is a type of computation in which many calculations or the execution of processes are carried out simultaneously. Power iteration clustering algorithm pic replaces the eigen values with pseudo eigen vector. Journal of parallel and distributed computing, july 8, 2012.
Though pic is fast and scalable it causes inter collision problem when dealing with larger datasets. Problem description clustering is the task of assigning a set of objects into groups called clusters so that the objects in the same cluster are more similar in some sense or another to each other than to those in other clusters. Parallel algorithms for hierarchical clustering sciencedirect. There are approximate algorithms for making spectral. Numerous new clustering algorithms have been introduced as a means to address these issues, for example densitybased methods e. Implementation of p pic algorithm in map reduce to. Parallel power iteration clustering for big data request pdf. Clusters are currently both the most popular and the most varied approach, ranging from a conventional network of workstations now to essentially custom parallel machines that just happen to use linux pcs as processor nodes. Each cluster aims to consist of objects with similar features. Reported utilization of the computers by their algorithm is 50%. The most timeconsuming operation of the algorithm is the multiplication of matrix by a vector, so it is effective for a very large sparse matrix with appropriate implementation.
Netcdf a set of software libraries and selfdescribing, machineindependent data formats that support the creation, access, and sharing of arrayoriented scientific data. Using the exponential expansion of space in hyperbolic geometry, hyperbolic random graphs exhibit high clustering, a power law degree distribution with adjustable exponentn and natural hierarchy. Power iteration clustering is fast, efficient and scalable. The cluster consists of 16 nodes, and in each node, there are 1 quad core intel xeon processor and 8 gb memory.
Normalize the calculated similarity matrix of the graph, wd1 a. Iterative clustering of high dimensional text data augmented. It computes a pseudoeigenvector of the normalized affinity matrix of the graph via power iteration and. Pic conversation 89 commits 31 checks 0 files changed. Cudabased parallelization of power iteration clustering for large. Software engineer in the software and analytics organization at ge research, in niskayuna, ny. In this paper, we use mcl to refer to both the algorithm and its associated sharedmemory parallel software.993 850 44 856 924 836 1317 994 552 1411 1293 87 1277 1449 670 904 1283 1198 827 553 60 901 176 1225 1433 384 357 63 1424 1075 1239 568 470 459 583 202 1433 1022 1318 301 860